Sed operations are not working or might i am doing it wrong?Working with columns - awk and sedUsing sed/awk to remove anything after first spaceSeparating names separated by “| character” to individual pairsRemove the multiple comma's from specific column of tab delimited fileand print the words on new lineAWK/SED Remove a specific latex command from the text AND closing bracket behind itRemove a specific latex command from the text AND closing bracket behind itHow can i print unique value of particular column and then print rest of the columns in next lineWhy might sed not make any change to a file?How to delete whitespaces in columns?Using NF with FPAT – what am I doing wrong?

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Sed operations are not working or might i am doing it wrong?


Working with columns - awk and sedUsing sed/awk to remove anything after first spaceSeparating names separated by “| character” to individual pairsRemove the multiple comma's from specific column of tab delimited fileand print the words on new lineAWK/SED Remove a specific latex command from the text AND closing bracket behind itRemove a specific latex command from the text AND closing bracket behind itHow can i print unique value of particular column and then print rest of the columns in next lineWhy might sed not make any change to a file?How to delete whitespaces in columns?Using NF with FPAT – what am I doing wrong?






.everyoneloves__top-leaderboard:empty,.everyoneloves__mid-leaderboard:empty,.everyoneloves__bot-mid-leaderboard:empty margin-bottom:0;








1















input: text:



chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053


Desired output:



chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


Tried: 



## No. of Columns in each line.
awk 'print NF' tt.txt
3
3
3
3
3
## operation to delete the co-ordinates affiliated with comma.
sed -e 's/,chr[A-Z0-9]_[0-9]-chr[A-Z0-9]_[0-9]*.//g' tt.txt


Basically I want to remove co-ordinates just after "," and want to keep only left hands (first one) co-ordinates.



NOTE:
1 In this operation, columns would be the same as input.
2. Comma sepratted co-ordinates are not fixed it can be any columns.
3. Chromosomes can any 1-19, X and Y.






linux awk sed







share|improve this question



















  • 1





    Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

    – DopeGhoti
    4 hours ago

















1















input: text:



chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053


Desired output:



chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


Tried: 



## No. of Columns in each line.
awk 'print NF' tt.txt
3
3
3
3
3
## operation to delete the co-ordinates affiliated with comma.
sed -e 's/,chr[A-Z0-9]_[0-9]-chr[A-Z0-9]_[0-9]*.//g' tt.txt


Basically I want to remove co-ordinates just after "," and want to keep only left hands (first one) co-ordinates.



NOTE:
1 In this operation, columns would be the same as input.
2. Comma sepratted co-ordinates are not fixed it can be any columns.
3. Chromosomes can any 1-19, X and Y.






linux awk sed







share|improve this question



















  • 1





    Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

    – DopeGhoti
    4 hours ago













1












1








1








input: text:



chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053


Desired output:



chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


Tried: 



## No. of Columns in each line.
awk 'print NF' tt.txt
3
3
3
3
3
## operation to delete the co-ordinates affiliated with comma.
sed -e 's/,chr[A-Z0-9]_[0-9]-chr[A-Z0-9]_[0-9]*.//g' tt.txt


Basically I want to remove co-ordinates just after "," and want to keep only left hands (first one) co-ordinates.



NOTE:
1 In this operation, columns would be the same as input.
2. Comma sepratted co-ordinates are not fixed it can be any columns.
3. Chromosomes can any 1-19, X and Y.






linux awk sed







share|improve this question
















input: text:



chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053
chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053


Desired output:



chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


Tried: 



## No. of Columns in each line.
awk 'print NF' tt.txt
3
3
3
3
3
## operation to delete the co-ordinates affiliated with comma.
sed -e 's/,chr[A-Z0-9]_[0-9]-chr[A-Z0-9]_[0-9]*.//g' tt.txt


Basically I want to remove co-ordinates just after "," and want to keep only left hands (first one) co-ordinates.



NOTE:
1 In this operation, columns would be the same as input.
2. Comma sepratted co-ordinates are not fixed it can be any columns.
3. Chromosomes can any 1-19, X and Y.






linux awk sed




linux awk sed






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited 4 hours ago







Rupesh

















asked 4 hours ago









RupeshRupesh

184




184







  • 1





    Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

    – DopeGhoti
    4 hours ago












  • 1





    Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

    – DopeGhoti
    4 hours ago







1




1





Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

– DopeGhoti
4 hours ago





Please, save a cat's life. Rather than cat file | sed 'thing', simply sed 'thing' file.

– DopeGhoti
4 hours ago










1 Answer
1






active

oldest

votes


















3














Simple enough:



$ sed -E 's/,[^ ]+//g' in
chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


The (extended) regular expression /,[^ ]+/ will match any sequence of a comma followed series of characters which are not a space.



The sed command s will substutute any matches of the first argument (in this case, the given expression), with the second argument (in this case, nothing); the g option to the s command says to make that substitution for all matches found rather than merely the first.






share|improve this answer

























  • awesome !! thanks Can you please explain, how its work?

    – Rupesh
    4 hours ago












  • Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

    – Rupesh
    4 hours ago











  • Looking at your edit, I seem to get the desired output with my given command.

    – DopeGhoti
    4 hours ago











  • Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

    – Rupesh
    4 hours ago











  • You could even handle tabs and spaces with /,[^ t]+/ (:

    – DopeGhoti
    4 hours ago











Your Answer








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1 Answer
1






active

oldest

votes








1 Answer
1






active

oldest

votes









active

oldest

votes






active

oldest

votes









3














Simple enough:



$ sed -E 's/,[^ ]+//g' in
chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


The (extended) regular expression /,[^ ]+/ will match any sequence of a comma followed series of characters which are not a space.



The sed command s will substutute any matches of the first argument (in this case, the given expression), with the second argument (in this case, nothing); the g option to the s command says to make that substitution for all matches found rather than merely the first.






share|improve this answer

























  • awesome !! thanks Can you please explain, how its work?

    – Rupesh
    4 hours ago












  • Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

    – Rupesh
    4 hours ago











  • Looking at your edit, I seem to get the desired output with my given command.

    – DopeGhoti
    4 hours ago











  • Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

    – Rupesh
    4 hours ago











  • You could even handle tabs and spaces with /,[^ t]+/ (:

    – DopeGhoti
    4 hours ago















3














Simple enough:



$ sed -E 's/,[^ ]+//g' in
chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


The (extended) regular expression /,[^ ]+/ will match any sequence of a comma followed series of characters which are not a space.



The sed command s will substutute any matches of the first argument (in this case, the given expression), with the second argument (in this case, nothing); the g option to the s command says to make that substitution for all matches found rather than merely the first.






share|improve this answer

























  • awesome !! thanks Can you please explain, how its work?

    – Rupesh
    4 hours ago












  • Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

    – Rupesh
    4 hours ago











  • Looking at your edit, I seem to get the desired output with my given command.

    – DopeGhoti
    4 hours ago











  • Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

    – Rupesh
    4 hours ago











  • You could even handle tabs and spaces with /,[^ t]+/ (:

    – DopeGhoti
    4 hours ago













3












3








3







Simple enough:



$ sed -E 's/,[^ ]+//g' in
chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


The (extended) regular expression /,[^ ]+/ will match any sequence of a comma followed series of characters which are not a space.



The sed command s will substutute any matches of the first argument (in this case, the given expression), with the second argument (in this case, nothing); the g option to the s command says to make that substitution for all matches found rather than merely the first.






share|improve this answer















Simple enough:



$ sed -E 's/,[^ ]+//g' in
chrX_143483005-chr6_103649292 chrX_143483110-chr_6103649147 chrX_143483004-chr6_103649293
chrX_143483110-chr_6103649147 chrX_143483005-chr6_103649292 0
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147
chrX_143483005-chr6_103649292 0 chrX_143483110-chr_6103649147
0 chrX_143483005-chr6_103649292 chrX_143482988-chr6_103649147


The (extended) regular expression /,[^ ]+/ will match any sequence of a comma followed series of characters which are not a space.



The sed command s will substutute any matches of the first argument (in this case, the given expression), with the second argument (in this case, nothing); the g option to the s command says to make that substitution for all matches found rather than merely the first.







share|improve this answer














share|improve this answer



share|improve this answer








edited 4 hours ago

























answered 4 hours ago









DopeGhotiDopeGhoti

47.7k56194




47.7k56194












  • awesome !! thanks Can you please explain, how its work?

    – Rupesh
    4 hours ago












  • Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

    – Rupesh
    4 hours ago











  • Looking at your edit, I seem to get the desired output with my given command.

    – DopeGhoti
    4 hours ago











  • Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

    – Rupesh
    4 hours ago











  • You could even handle tabs and spaces with /,[^ t]+/ (:

    – DopeGhoti
    4 hours ago

















  • awesome !! thanks Can you please explain, how its work?

    – Rupesh
    4 hours ago












  • Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

    – Rupesh
    4 hours ago











  • Looking at your edit, I seem to get the desired output with my given command.

    – DopeGhoti
    4 hours ago











  • Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

    – Rupesh
    4 hours ago











  • You could even handle tabs and spaces with /,[^ t]+/ (:

    – DopeGhoti
    4 hours ago
















awesome !! thanks Can you please explain, how its work?

– Rupesh
4 hours ago






awesome !! thanks Can you please explain, how its work?

– Rupesh
4 hours ago














Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

– Rupesh
4 hours ago





Not working with this line: 0 chrX_143483005-chr6_103649292,chrX_143483110-chr6_103649131 chrX_143482988-chr6_103649147,chrX_143483004-chr6_103649293,chrX_143483110-chr6_103649291,chrX_143483110-chr6_103649053 it removes last column.

– Rupesh
4 hours ago













Looking at your edit, I seem to get the desired output with my given command.

– DopeGhoti
4 hours ago





Looking at your edit, I seem to get the desired output with my given command.

– DopeGhoti
4 hours ago













Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

– Rupesh
4 hours ago





Ok, now i get it. I have tab separated columns and here you are replacing "space", so i just added sed -E 's/,[^t]+//g' input. its working now thanks for your gentle reply

– Rupesh
4 hours ago













You could even handle tabs and spaces with /,[^ t]+/ (:

– DopeGhoti
4 hours ago





You could even handle tabs and spaces with /,[^ t]+/ (:

– DopeGhoti
4 hours ago

















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